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antismash

Bioconda 환경에서 antiSMASH 설치하고 활용하기

https://docs.antismash.secondarymetabolites.org/install/

# conda create -n antismash antismash
# source activate antismash
(antismash) # download-antismash-databases
Downloading large file Pfam-A.hmm.gz. Please be patient...
Downloading Pfam-A.hmm.gz finished successfully.
Creating checksum of Pfam-A.hmm.gz
Extraction of Pfam-A.hmm.gz finished successfully.
Downloading large file clusterblast_20170105_v8_31.tar.xz. Please be patient...
Downloading clusterblast_20170105_v8_31.tar.xz finished successfully.
Creating checksum of clusterblast_20170105_v8_31.tar.xz
Extraction of clusterblast_20170105_v8_31.tar.xz finished successfully.
Extraction of clusterblast_20170105_v8_31.tar finished successfully.
(antismash) # source deactivate antismash

# 실행
(antismash) $ source activate antismash
(antismash) $ antismash my_input.gbk

microbe server에서 시험 실행하는데 걸리는 시간(E681) real 16m19.902s user 242m16.113s sys 3m2.374s

antismash.txt · Last modified: 2018/06/08 10:37 by hyjeong