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bracken_for_species_abundance_esimation

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bracken_for_species_abundance_esimation [2017/05/26 13:46]
hyjeong [Step 1. Kraken classification of DNA reads]
bracken_for_species_abundance_esimation [2017/05/26 13:49] (current)
hyjeong [Step 1. Kraken classification of DNA reads]
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 ==== Step 1. Kraken classification of DNA reads ==== ==== Step 1. Kraken classification of DNA reads ====
 Kraken에 대한 상세한 설명 자료는 [[https://​ccb.jhu.edu/​software/​kraken/​|소개]] 및 [[https://​ccb.jhu.edu/​software/​kraken/​MANUAL.html|매뉴얼]]을 참조한다. Kraken에 대한 상세한 설명 자료는 [[https://​ccb.jhu.edu/​software/​kraken/​|소개]] 및 [[https://​ccb.jhu.edu/​software/​kraken/​MANUAL.html|매뉴얼]]을 참조한다.
-  $ KRAKEB_DB=/​usr/​local/​apps/​kaken/​standard_kraken # 각자 상황에 맞게+  $ KRAKEN_DB=/​usr/​local/​apps/​kaken/​standard_kraken # 각자 상황에 맞게
   $ kraken --db $KRAKEN_DB --threads=16 READS.fastq > READS.fastq.kraken   $ kraken --db $KRAKEN_DB --threads=16 READS.fastq > READS.fastq.kraken
   $ kraken-report --db $KRAKEN_DB READS.fastq.kraken > READS.fastq.kraken.report   $ kraken-report --db $KRAKEN_DB READS.fastq.kraken > READS.fastq.kraken.report
bracken_for_species_abundance_esimation.txt · Last modified: 2017/05/26 13:49 by hyjeong