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myillu_04_plotkmer.sh

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myillu_04_plotkmer.sh [2016/05/07 13:05]
hyjeong created
myillu_04_plotkmer.sh [2016/05/07 13:05] (current)
hyjeong
Line 2: Line 2:
  
   #!/bin/sh   #!/bin/sh
- +  
   FILENAME=$(basename "$1") #sample.hist or sample.pe.fq.hist   FILENAME=$(basename "$1") #sample.hist or sample.pe.fq.hist
   #BASE=${FILENAME/.*}   #BASE=${FILENAME/.*}
   BASE=${FILENAME/.hist}   BASE=${FILENAME/.hist}
   echo "File base: $BASE"   echo "File base: $BASE"
- +  
   echo "set term png" > ${BASE}.gp   echo "set term png" > ${BASE}.gp
   echo "set output \"${BASE}.png\"" >> ${BASE}.gp   echo "set output \"${BASE}.png\"" >> ${BASE}.gp
Line 17: Line 17:
   echo "set ylabel \"number of distinct kmer\"" >> ${BASE}.gp   echo "set ylabel \"number of distinct kmer\"" >> ${BASE}.gp
   echo "plot \"$1\" using 1:2 with lines" >> ${BASE}.gp   echo "plot \"$1\" using 1:2 with lines" >> ${BASE}.gp
- +  
   gnuplot ${BASE}.gp   gnuplot ${BASE}.gp
  
myillu_04_plotkmer.sh.txt ยท Last modified: 2016/05/07 13:05 by hyjeong